Bioconductor Statistical test

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posterior pobability statistical test theory

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by stephanie.rialle • 0

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Deseq deseq2 differential gene expression rnaseq statistical test

7.0 years ago Marina ▴ 40

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biologicalreplicates statistical test

updated 8.5 years ago by Gordon Smyth 52k • written 17.4 years ago by Yogi Sundaravadanam ▴ 320

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diffHiC statistical test

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by lazaris • 0

4 results • Page 1 of 1

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Comment: Overcoming confounding in batch effect correction by mimi • 0

https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion

Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k

Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…

Answer: Store Matrix in DataFrame Cell by James W. MacDonald 68k

Put it in a list and put the list in a column.

Comment: For some reason I can't update BiocManager to 3.20 by James W. MacDonald 68k

Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …

Comment: p-value the same for different contrasts DESeq2 by caroline.zanchi • 0

It would be great if it were possible to do something similar using GlmGamPoi !

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Overcoming confounding in batch effect correction

Answer: Standardization of rlog transformed counts before PCA

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Popular Question to Robert Castelo ★ 3.4k